SMOG 2
A Downloadable, Portable and Versatile Software Package
Manuscript   Tutorial   Manual   Download   SMOG-CHECK   Force Field Repo   Version History
SMOG 2 is a standalone software package for generating SMOG models. Except for the contact map code, this is a complete rewrite of the original SMOG software. The original models are still provided, though a few default parameters have changed. While the SMOG web-based interface will continue to be available, the standalone code is particularly useful if you want to modify the force field (e.g. include new residues, design a new variant, etc).
We would like to express our gratitude to all of the beta testers. Based on your feedback, we have extensively tested the code and have tried to make it easy to use. Since we will continue to develop the software, your continued feedback is always appreciated.
Manuscript: Introductory Tutorial:
User's Manual
Version |
2.0 |
Beta (and 2.1/2.2) |
Download SMOG 2
Version | Release Date | md5sum (.tgz file) |
2.2 | 11/24/18 | 4a49290f2a0f681a6f7d5589350fc63e |
2.1 | 01/24/18 | bbf238c2340f6b15daf7a0b2e4e4e56c |
2.0.3 | 03/12/16 | 508d36449c9527722fcb0f64fab84a99 |
2.0.2 | 10/12/15 | ffab3d632c87d12b2a8bfa24b141a988 |
2.0.1 | 8/31/15 | 9a66f704b7e2386a2e6400e37f6c5f27 |
2.0 | 7/20/15 | 1ec90306129970f43b7895a999d7469e |
Beta | ||
Git repository |
SMOG-CHECK (test suite):
It is strongly recommended that you verify your installation of SMOG is working properly on your machine. We have prepared a set of test scripts to verify that SMOG is generating appropriate models. These checks are version-specific.Version | md5sum (.tgz file) |
2.2 | 25cb56afc4cf2f5bfc6369e0d8e2573a |
2.1 | d61efe5b2171e81a696beda3a3f85585 |
2.0 (and 2.0.x) | 3d8769d49eddde28911a7806ba516d4e |
Beta | |
Git repository |
quick-check
and a very comprehensive set of tests called smog-check
, which can take up to an hour to complete. You will also find a script called smog-tool-check
that will test the basic functionality of the tools included with SMOG 2. We are continually adding more tests to these scripts.
If your environment is configured properly for smog2 (i.e. when you type smog2 it prints the smog2 splashtext) then the checks can be run simply by:In an effort to ease the sharing of models and increase transparency, users are encouraged to make their templates publicly available through the force field repository. See the repo here.
>$ cd [smog-check-directory]
>$ ./quick-check
...quick-check output...
>$ ./smog-check
...smog-check output...
>$ ./smog-tool-check
...smog-tool-check output...
Version History for SMOG 2:
Page created and maintained by Jeff Noel and Paul Whitford